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@Victorian-Bioinformatics-Consortium @pha4ge

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  1. prokka prokka Public

    ⚑ β™’ Rapid prokaryotic genome annotation

    Perl 986 235

  2. snippy snippy Public

    βœ‚οΈ ⚑ Rapid haploid variant calling and core genome alignment

    Perl 587 123

  3. shovill shovill Public

    βš‘β™ οΈ Assemble bacterial isolate genomes from Illumina paired-end reads

    Perl 261 48

  4. abricate abricate Public

    πŸ”Ž πŸ’Š Mass screening of contigs for antimicrobial and virulence genes

    Perl 497 105

  5. mlst mlst Public

    πŸ†” Scan contig files against PubMLST typing schemes

    Perl 285 59

  6. barrnap barrnap Public

    πŸ”¬ β™Œ Microbial RNA annotation

    Perl 298 46